Version 3.0

CLUSTALW
Multiple Sequence Alignment

Selected Sequence(s)
PPARb
  • rPPARg
  • rPPARa

    


 CLUSTAL W(1.4) Multiple Sequence Alignments



Sequence type explicitly set to Protein

Sequence format is Pearson
Sequence 1: rPPARb                                                440 aa
Sequence 2: rPPARg                                                475 aa
Sequence 3: rPPARa                                                468 aa

Start of Pairwise alignments
Aligning...
Sequences (1:2) Aligned. Score:  54
Sequences (1:3) Aligned. Score:  59
Sequences (2:3) Aligned. Score:  52

Start of Multiple Alignment
There are 2 groups
Aligning...
Group 1: Sequences:   2      Score:4518
Group 2: Sequences:   3      Score:4639



Consensus length = 478


    

rPPARb     ---MEQPQEETPEARE-----------------------------EEKEEVATGDGAPEL
rPPARg     MVDTEMPFWPTNFGISSVDLSVMDDHSHSFDIKPFTTVDFSSISAPHYEDIPFTRADPMV
rPPARa     MVDTESPICPLSPLEADDLESPLSEEFLQEMG---------NIQEISQSLGEESSGSFSF

rPPARb     NGGP-EHTLPSSSCTDLSQNSSPSSLLDQLQMGCDGASGGS-----LNMECRVCGDKASG
rPPARg     ADYKYDLKLQEYQSAIKVEPASPPYYSEKTQLYNRPHEEPSN--SLMAIECRVCGDKASG
rPPARa     ADYQYLGSCPGSEGSVITDTLSPASSPSSVSCPAVPTSTDESPGNALNIECRICGDKASG

rPPARb     FHYGVHACEGCKGFFRRTIRMKLKYEKCDRICKIQKKNRNKCQYCRFQKCLALGMSHNAI
rPPARg     FHYGVHACEGCKGFFRRTIRLKLIYDRCDLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAI
rPPARa     YHYGVHACEGCKGFFRRTIRLKLAYDKCDRSCKIQKKNRNKCQYCRFHKCLSVGMSHNAI

rPPARb     RFGRMPEAEKRKLVAGLTASEGCQQNPQLADLKAFSKHIYNAYLKNFNMTKKKARSILTG
rPPARg     RFGRMPQAEKEKLLAEISS-DIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTG
rPPARa     RFGRMPRSEKAKLKAEILTCEHDLKDSETADLKSLAKRIHEAYLKNFNMNKVKARVILAG

rPPARb     KSSHNAPFIIHDIETLWQAEKGLVWKQLVNGPPPYNEISVHVFYRCQSTTVETVRELTEF
rPPARg     KTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRSVEAVQEITEY
rPPARa     KTSNNPPFVIHDMETLCMAEKTLVAKMVANGVEN-KEAEVRFFHCCQCMSVETVTELTEF

rPPARb     AKNIPNFSSLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLLVANGSGFVTHEFLRSIRKP
rPPARg     AKNIPGFINLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTREFLKSLRKP
rPPARa     AKAIPGFANLDLNDQVTLLKYGVYEAIFTMLSSLMNKDGMLIAYGNGFITREFLKNLRKP

rPPARb     FSDIIEPKFEFAVKFNALELVDSDLALFIAAIILCGDRPGLMNVPQVEAIQDTILQALEF
rPPARg     FGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALEL
rPPARa     FCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNIGYIEKLQEGIVHVLKL

rPPARb     HLQVNHPDSQYLFPKLLQKMADLRQLVTEHAQMMQWLKKTESETLLHPLLQEIYKDMY
rPPARg     QLKLNHPESSQLFAKVLQKMTDLRQIVTEHVQLLHVIKKTETDMSLHPLLQEIYKDLY
rPPARa     HLQSNHPDDTFLFPKLLQKMVDLRQLVTEHAQLVQVIKKTESDAALHPLLQEIYRDMY









    

    


    

    



    



















    
Citation

      
Algorithm Citation:

      
  
    Higgins, D.G., Bleasby, A.J. and Fuchs, R. (1992) CLUSTAL V: improved software 
    for multiple sequence alignment. Computer Applications in the Biosciences 
    (CABIOS), 8(2):189-191.
    
      
    Thompson J.D., Higgins D.G., Gibson T.J.  "CLUSTAL W: improving the sensitivity 
    of progressive multiple sequence alignment through sequence weighting, 
    position-specific gap penalties and weight matrix choice." Nucleic Acids Res. 
    22:4673-4680(1994).
  

      
Program Citation:

      
  
    Julie D. Thompson, Desmond G. Higgins and Toby J. Gibson, modified; 
    any errors are due to the modifications.
  

    

    

    
Copyright (C) 1997, Board of Trustees of the University of Illinois.